South Sudan among 11 countries in UN $50 million El Niño funding
Farmers walk through an irrigated field in Kapoeta South County, Eastern Equatoria State, on July 21, 2026, as they work to sustain crop production amid drought conditions. | Credit | Daniel Garang Deng/TRC

South Sudan is among 11 countries targeted for more than $50 million in United Nations emergency funding to prepare for El Niño, as government planning scenarios warn of potential drought and flooding affecting millions of people.

Tom Fletcher, the UN under-secretary-general for humanitarian affairs and emergency relief coordinator, announced on October 21 that he had released the money from the Central Emergency Response Fund (CERF) to help countries prepare for climate-related shocks before they escalate into humanitarian emergencies.

Chad, El Salvador, Ethiopia and Somalia were among the other countries named. The UN did not specify how much of the funding would go to South Sudan or each country.

The funding will support anticipatory action, including cash assistance for vulnerable families, measures to protect crops and livestock, and moving humanitarian supplies before floods cut off roads and isolate communities.

“We call on countries, on development banks, on international financial institutions to get the funding moving to this work before that damage is done, not afterwards,” Fletcher said.

Drought and flood risks

At an IGAD regional high-level forum on El Niño preparedness in Addis Ababa, Charles Placido, director of emergency preparedness and response at South Sudan’s Ministry of Humanitarian Affairs and Disaster Management, outlined government planning scenarios covering about 1.7 million people under a drought scenario and 838,000 under a separate flood scenario.

The projections come as rainfall deficits and crop failures have already been reported across parts of South Sudan. A September assessment by the Famine Early Warning Systems Network (FEWS NET) found that cumulative rainfall in the worst-affected eastern and southeastern areas was below 60 percent of normal.

The assessment documented crop failures in parts of Jonglei, Northern Bahr el Ghazal, Lakes, Warrap, Unity, Central Equatoria and Eastern Equatoria. In Lafon and Greater Kapoeta, poor livestock conditions and unusually early livestock migration were reported amid shortages of pasture and water.

FEWS NET’s October regional outlook projected that El Niño-related reductions in the 2026 harvest could deepen food consumption deficits, with the most severe impacts expected in Jonglei and southern Upper Nile between May and September 2027.

The World Meteorological Organization warned on October 21 that the developing El Niño could become exceptionally strong, affecting rainfall and temperatures in different regions. Its outlook said sea surface temperatures in the tropical Pacific could reach 3.8 degrees Celsius above average between November 2026 and January 2027.

El Niño is a natural climate pattern that alters rainfall and temperature around the world, increasing the likelihood of drought in some regions and heavy rainfall and flooding in others.

Fletcher said about 50 million people globally could face increased hunger because of the phenomenon. He also cited an African Development Bank estimate that El Niño could cost African countries between $10 billion and $20 billion and reduce gross domestic product by 1 to 2 percent.

UK announces £2.35 million for South Sudan

The United Kingdom has also announced £2.35 million, equivalent to about $3.15 million, to help mitigate El Niño-related risks in South Sudan.

UK Ambassador Rebecca Fabrizi announced the funding on October 21, saying Britain would continue supporting communities to adapt to climate change and strengthen their livelihoods.

Fletcher said the coming weeks are critical for preparedness, urging governments, development banks and humanitarian partners to make funding available before communities suffer losses.